Aquaculture is major occupation for the humans living at coastal areas. The fresh water cultivation of the certain species is prominent in tropical and sub-tropical climates. Here the proposed work shows the relation-ship between the growth of the certain species of marine habitats and the factors affecting their growth with respect to the medium of their living. Advancement of embedded systems in aquaculture leads to new innovations of monitoring and controlling the various parameters. Here the embedded system based application is used, through which the monitoring and controlling of the light is done with the help of LabVIEW based PI controller as well as Fuzzy controller for the effective and healthy growth of the marine habitat. The Designed controllers are energy efficient based controller for controlling the Light Source (LS) via appropriate lighting control levels. The controlling and managing of the system is based on the present light intensity with the help of virtual controller. The proposed work involves the designing and implementation of PI controller and the fuzzy controller for the real time setup to monitor and control the process for optimal and feasible solution.